Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs165857 chr22:21205257 A/G 2.26E-6 170 25.4 31.2 12.57 KM Plot
PCPG rs1677722 chr10:26934152 C/T 0.000146 178 26.27 22.63 24.53 KM Plot
PCPG rs1677724 chr10:26932323 A/G 0.000146 177 26.57 22.63 24.53 KM Plot
PCPG rs16823034 chr1:36920810 C/T 7.31E-5 178 25.4 26.62 10.3 KM Plot
PCPG rs16826787 chr1:40511044 A/G 3.3E-6 170 25 25.53 37.18 KM Plot
PCPG rs16826814 chr1:40518110 C/G 0.000336 175 25 27.27 25.17 KM Plot
PCPG rs16863112 chr2:176146829 C/T 0.000139 175 25.28 28.47 6.62 KM Plot
PCPG rs16863136 chr2:176214049 A/G 0.000112 178 6.62 28.38 25.28 KM Plot
PCPG rs16868144 chr7:158846831 C/T 0.000194 176 25.53 19.87 41.87 KM Plot
PCPG rs16870033 chr8:104083786 G/T 7.93E-12 178 25.08 26.57 6.03 KM Plot
PCPG rs16941185 chr16:86443847 C/T 0.000222 178 25.17 30.18 3.17 KM Plot
PCPG rs16941250 chr16:86456876 C/T 0.000218 178 41.12 26.4 25.08 KM Plot
PCPG rs16959447 chr17:64512341 A/G 0.000257 178 25.17 29.43 24.6 KM Plot
PCPG rs16969038 chr15:39748389 A/G 0.000421 178 24.85 26.47 26.33 KM Plot
PCPG rs16978577 chr18:44146836 A/G 9.19E-8 178 25.17 26.53 19.87 KM Plot